PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22107
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ZF-HD
Protein Properties Length: 354aa    MW: 39187.6 Da    PI: 8.0401
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22107genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.43.1e-32109166359
                ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                                 v+YkeClkNh a+lGgha+DGC+Efmps++++  ++a++kCaACgCHRnFHRre+ee
  Tp57577_TGAC_v2_mRNA22107 109 VVTYKECLKNHVATLGGHALDGCCEFMPSPTATsDDPASIKCAACGCHRNFHRREPEE 166
                                689***************************999788******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.6E-27110164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-22110163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.0E-28111163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.766112163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.02E-19233303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-30237303IPR009057Homeodomain-like
TIGRFAMsTIGR015656.3E-28242299IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MLIVTKVCRV EREEDTELCL NFNTSSHKFI MMEVLTTTTT TNTITTPLTN SKPQEPESEN  60
PTRIQQPITL NITKPLSFSN GVLKRHHPNT HNHHNNHHHN NNNNNNNVVV TYKECLKNHV  120
ATLGGHALDG CCEFMPSPTA TSDDPASIKC AACGCHRNFH RREPEEPIST VFEYQPHHRH  180
HPPPPPLFQS RSPSSPSPPP ISSYPSAPHM LLALSGAGVG LSIPPENTAA PLNLSSPMGT  240
SRKRFRTKFT QEQKEKMHEF AEKVGWKMQK RDEEMVNGFC NEVGVDRSVL KVWMHNNKNT  300
LGRKLTDHVN GNGAAAVGTA VDGGSGGGFX XXXXXXXXXX LMGLLLLLDL FFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-222413001675ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1396000.0AC139600.16 Medicago truncatula chromosome 6 clone mth2-20m4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618493.21e-139transcription factor HB29-like protein
SwissprotQ9LXG02e-71ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLG7KKI21e-139G7KKI2_MEDTR; Transcription factor HB29-like protein
STRINGGLYMA13G05420.11e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-60homeobox protein 34